miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|160434266|gb|EY203154.1|EY203154 GGCCGCCCTTTTTTTTCTGTTCTCTCTTTTCTAGTTTTGAGAACGTGGGAAAATCACCCAGAATGGGACGTGTAATTCGT
GCTCAGCGTAAAGGAGCGGGATCTGTGTTCATTGCACACACCGCAAAGCGACGGGGAGCTGCCAAATTCCGGCAGTTGGA
CTTCTCCGAGCGACATGGATACCTCAAGGGAGTCGTTAAGGACATTGTTCATGATCCAGGCCGTGGTGCTCCACTAGCCA
TTGTCCATTTCCGCGATCCCTATCGCTACAAGATCCGCAAGGAATTGTTTATTGCTCCCGAGGGCATGTACACCGGGCAG
TTTGTCTACTGCGGTCGCAAGGCCAATTTGCAGATTGGCAATGTGATGCCTGTGGGACAGATGCCCGAAGGTACCATTGT
GTGCAACTTGGAAGAGAAGACTGGCGATCGTGGACGCCTTGCCAGAACATCCAGAAACTACGCTACGGTTATTGCTCACA
ATCCGGACACCAAAAAGACACGTGTGAAGCTTCCCAGTGGCACCAAGAAGGTCGTGTCCTCGTCCAATCGTGCAATGGTA
GAAATTGTAGCTGGTGGCAGTAAAATTGA




Most similar to sp|Q9V3G1|RL8_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9V3G1|RL8_DROME 60S ribosomal protein L8 OS=Drosophila
           melanogaster GN=RpL8 PE=2 SV=1
          Length = 256

 Score =  309 bits (792), Expect = 7e-84
 Identities = 150/175 (85%), Positives = 161/175 (92%)
 Frame = +3

Query: 63  MGRVIRAQRKGAGSVFIAHTAKRRGAAKFRQLDFSERHGYLKGVVKDIVHDPGRGAPLAI 242
           MGRVIRAQRKGAGSVF AH  KR+GAAK R LDF+ER GY++GVVKDI+HDPGRGAPLA+
Sbjct: 1   MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAV 60

Query: 243 VHFRDPYRYKIRKELFIAPEGMYTGQFVYCGRKANLQIGNVMPVGQMPEGTIVCNLEEKT 422
           VHFRDPYRYKIRKELFIAPEGM+TGQFVYCGRKA LQIGNVMP+ QMPEGTI+CNLEEKT
Sbjct: 61  VHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKT 120

Query: 423 GDRGRLARTSRNYATVIAHNPDTKKTRVKLPSGTKKVVSSSNRAMVEIVAGGSKI 587
           GDRGRLARTS NYATVIAHN DTKKTRVKLPSG KKVV S+NRAMV IVAGG +I
Sbjct: 121 GDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRI 175